Projects I am currently actively involved in:
- gEAR (Gene Expression Analysis Resource) data portal
- FADU - Feature Aggregate Depth Utility
IGS (Institute for Genome Sciences) Pipelines
- Pangenome analysis pipeline
- SNP analysis pipeline
- Rhinovirus annotation pipeline
- VIROME annotation pipeline (collab with University of Delaware)
- DNASeq variant calling pipeline (Grove - part of Arboreum package)
- Prokaryotic Genome Annotation pipeline
- Genbank Submission pipeline
- Transcriptomics pipeline (Grotto - part of Arboreum package)
- LGTSeek - Lateral Gene Transfer pipeline
Other projects at IGS
- Cloud Virtual Resource (CloVR) and associated pipelines
- Manatee (manual genome annotation webtool)
- Chiron - EC2- and Docker-based Human Microbiome Project analysis pipelines
- Data Commons Pilot Phase Consortium (DCPPC) data portal
- Neuroscience Multi-omic (NeMO) data portal
- NeMO Archive ingest and datastore system